List of publications
Küchler, E., Hauptmann, R., Czernilofsky, A.P., Fiser, I., Barta, A., Voorma, H.O., Stöffler, G., und Scheit, K.H. (1974) "A tudy f the structure of the E. coli ribosomes by affinity labelling". Acta biol. med. germ. 33, 633-637.
Barta, A., Küchler, E., Branlant, C., Sri Widada, J., Krol, A., and Ebel, J.P. (1975) "Photoaffinity labelling of the 23 S RNA at the donor-site of the E. coli ribosome". FEBS Lett. 56, 170-174.
Küchler, E., and Barta A., (1977) "Aromatic Ketone Derivatives of Aminoacyl-tRNA as Photoaffinity Labels for Ribosomes". METHODS IN ENZYMOLOGY, (W.B. Jakoby, M.K. Wilchek, eds.) Vol XLVI, 676-683.
Matzke, A.J.M., Barta, A., and Küchler, E. (1980) "Photoinduced crosslinking between phenylalanine tRNA and mRNA". Eur. J. Biochem. 112, 169-178.
Matzke, A.J.M., Barta, A., and Küchler, E. (1980) "On the mechanis of translocation: Relative arrangements of tRNA and mRNA on the ribosome". Proc. Natl. Acad. Sci. USA 77, 5110-5114.
Barta, A., R.I. Richards, J.D. Baxter, and J. Shine (1981). "Primary structure and evolution of rat growth hormone gene". Proc. Natl. Acad. Sci. U.S.A., 78, 4867-4871.
Barta, A., and Küchler, E. (1983). "Part of the 23S RNA located in the 11S RNA fragment is a constituent of the ribosomal peptidyl-transferase center". FEBS Lett., 163, 319-323.
Karin, M., Eberhardt, N.L., Mellon, .H., Mallich, N., Richards, R.I., later, .P., Barta, A., Martial J.A. and Cathala, G. (1984). "Expression and hormonal regulation of the rat growth hormone gene in transfected mouse cells". DNA, 3, 147-155.
Barta, A., Steiner, G., Brosius, J., Noller, H.F. and Kuechler. E. (1984). "Identification of a site on 23S ribosomal RNA located at the peptidyltransferase center". Proc. Natl. Acad. Sci. U.S.A., 81, 3607-3611.
Selby, M.J., Barta, A., Baxter, J.D., Bell, G.I., and Eberhardt, N.L. (1984)." Analysis of a major human chorionic somatomammotropin gene: Evidence for two functional promoter elements". J. Biol. Chem., 259, 13131-13138.
Barta, A., K. Sommergruber, D. Thompson, K. Hartmuth, M.A. Matzke, and A.J.M. Matzke (1986). "The expression of a nopaline synthase-human growth hormone chimaeric gene in transformed tobacco and sunflower callus tissue". Plant Mol. Biol., 6, 347-357.
Hartmuth, K., and A. Barta (1986). "In vitro processing of a plant pre-mRNA in a HeLa cell nuclear extract". Nucl. Acids Res., 14, 7513-7528.
Hirt, H., J. Kimelman, M. Birnbaum, E. Chen, P.H. Seeburg, N.L.Eberhardt, and A. Barta (1987). "The human growth hormone gene locus: Structure, evoution and allelic variations". DNA, 6, 59-70.
Hartmuth, K., and Barta, A. (1987). "In vitro processing of the human growth hormone primary transcript". Nucl. Acids Res., 15, 7005-7025.
Hartmuth, K., and Barta, A. (1988). "Unusual Branch Point Selection in Processing of Human Growth hormone Pre-mRNA." Mol. Cell. Biol., 8, 2011-2020.
Kuechler, E., Steiner, G., and Barta, A. (1988). "Photoaffinity Labelling of Peptidyl-Transferase." METHODS OF ENYMOLOGY, 164, 361 - 372.
Steiner, G., Kuechler, E. and Barta, A. (1988) "Photoaffintiy labeling at the peptidyltransferase center reveals two different positions for A- and P- site in domain V of 23S rRNA." EMBO J., 7, 3949-3955.
Heberle-Bors, E., Charvat, B., Thompson, D., Schernthaner, J.P., Barta, A., Matzke, A.J.M., and Matzke M.A. 1988 "Genetic analysis of T-DNA insertions into the tobacco genome". Plant Cell Reports, 7, 571-574.
Hirt, H., Casari, G., Barta, A. (1989) "Cadmium-enhanced gene expression in suspension-culture cells of tobacco". Planta, 179, 414-420.
Hirt, H., Sommergruber, K., and Barta, A., (1990) "Effects of Cadmium on Tobacco: Synthesis and Regulation of Cadmium-Binding Peptides", Biochem.Physiol.Pflanzen, 186, 153-163.
Waigmann, E., and Barta, A., (1992) "Processing of chimeric introns in dicot plants: evidence for a close cooperation between 5'and 3' splice sites. Nucl. Acids Res. 20, 75-81.
Steiner, G., Hartmuth, K., Skriner, K., Maurer-Fogy, I., Sinski, A., Thalmann, E., Hassfeld, W., Barta, A., and Smolen, J. (1992) "Purification and partial sequencing of the nuclear autoantigen RA33 shows that it is indistinguishable from the A2 protein of the heterogeneous nuclear ribonucleoprotein complex. J. Clin. Invest. 90, 1061-1066.
Palmetshofer, A., Zechner, D., Luger A., and Barta, A. (1995) "Splicing variants of the human growth hormone mRNA: detection in pituitary, mononuclear cells and dermal fibroblast." Mol. Cell. Endocrinology, 113, 225-234.
Lopato, S., Mayeda, A., Krainer, A.R., and Barta, A. (1996) "Pre-mRNA splicing in plants: Characterization of Ser/Arg splicing factors." Proc. Natl. Acad. Sci. U.S.A., 93, 3074-3079.
Lopato, S., Waigmann, E., and Barta, A. (1996) "Characterization of a novel Argenine/Serine-rich splicing factor in Arabidopsis." The Plant Cell, 8, 2255-2264.
Oehler, R., Polacek, N., Steiner, G., and Barta, A. (1997) „Interaction of tetracycline with RNA: Photoincorporation into ribosomal RNA of Escherichia coli.“ Nucleic Acids Res., 25, 1219-1224.
Winter, D., Polacek, N., Halama, I., Streicher, B., and Barta, A. (1997) „ Lead-catalysed specific cleavage of ribosomal RNAs“. Nucleic Acids Res., 25, 1817-1824.
Skriner, K., Sommergruber, W.H., Tremmel, V., Fischer, I., Barta, A., Smolen, J.S., and Steiner, G. (1997) Anti-A2/RA33 Autoantibodies are Directed to the RNA Binding Region of the A2 Protein of the Heterogeneous Nuclear Ribonucleoprotein Complex: Differential Epitope Recognition in Rheumatoid Arthritis, SLE, and Mixed Connective Tissue Disease. J. Clin. Invest., 100, 127-135.
Polacek, N., and Barta, A. (1998) Metal ion probing of ribosomal RNA: Evidence for evolutionarly conserved divalent cation binding pockets“. RNA, 4, 1282-1294.
Lopato, S., Gattoni, R., Fabini, G., Stevenin, J., and Barta, A. (1999) „ A novel family of plant splicing factors with a Zn knuckle motif: examination of RNA binding and splicing activities“. Plant Mol. Biol., 39, 761-773.
Dorner, S., and Barta, A. (1999) „Probing ribosome structure by Europium-induced RNA cleavage“. Biol. Chem. 380, 243-251.
Lopato, S., Kalyna, M., Dorner, S., Kobayashi, R, Krainer, A.R., and Barta, A., (1999) „atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes.“ Genes and Dev. 13:978-1001.
Polacek, N., Patzke, S., Nierhaus, K. H. and Barta, A. (2000) " Periodic conformational changes in rRNA: Monitoring the dynamics of translating ribosomes." Molecular Cell, 6, 159-171.
Barta, A., Dorner, S., and Polacek, N. et al., (2001) "Mechanism of Ribosomal Peptide Bond Formation", Science, 291, 203.
Bayfield, M.A., Dahlberg, A.E., Schulmeister, U., Dorner, S., and Barta, A. (2001) A conformational change in the ribosomal peptidyl transferase center upon active/inactive transition", Proc. Natl. Acad. Sci. U.S.A., 98, 10096-10101.
Z. Lorkovic and A. Barta (2002) Genome analysis: RNA binding Proteins from the flowering plant Arabidopsis thaliana, “. Nucleic Acids Res, 30, 623-635.
Lopato, S., Forstner, C., Kalyna, M., Hilscher, J., Langhammer, U., Indrapichate, K., Lorkovic, Z.J. and Barta A., (2002) "Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factor". J. Biol. Chem., 277, 39989-39998.
Dorner, S., Polacek, N., Schulmeister, U., Panuschka, C.,and Barta, A. (2002) Molecular aspects of the ribosomal peptidyl transferase Biochem Soc Trans, 30, 1131- 1136.
Michael Meissner, Sergiy Lopato, Josef Gotzmann, Georg Sauermann and Andrea Barta, (2003) "Proto-oncoprotein TLS/FUS is asscoiated to the nuclear matrix and complexed with splicing factors S PTB, SRm160 and SR proteins" Exp. Cell Res., 283, 184-195.
Kalyna, M., Lopato, S., and Barta, A. (2003) Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development, Mol Biol Cell, 14, 3565-357738)
Dorner, S., Panuschka, C., Schmid, W. and Barta, A. (2003) Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2'-OH to activity. Nucl. Acids Res. 31, 6536-6542.
Anokhina MM, Barta A, Nierhaus KH, Spiridonova VA, Kopylov AM. Mapping of the second tetracycline binding site on the ribosomal small subunit of E.coli. Nucleic Acids Res. 2004 May; 32(8):2594-7.
Lorkovic, Z.J., Hilscher, J., and Barta, A. Use of fluorescent protein tags to study nuclear organization of the splicosomal machinery in transiently transformed living plant cells. Mol Biol Cell. 2004 Jul; 15(7):3233-43
Lorkovic, Z.J., Lopato, S., Pexa, M., Lehner, R., and Barta, A. Interaction of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 snRNP-specific proteins suggests their involvment in pre-mRNA splicing. J. Biol. Chem. 2004 Aug; 279, 33890-33898.
Kalyna M, Barta A. A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions? Biochem Soc. Trans. 2004 Aug; 32(Pt 4):561-4.
Schroeder R, Barta A, Semrad K. Strategies for RNA folding and assembly. Nat Rev Mol Cell Biol. 2004 Nov; 5(11):908-19.
Lorkovic ZJ, Barta A. Compartmentalization of the splicing machinery in plant cell nuclei. Trends Plant Sci. 2004 Dec; 9(12):565-8.
Dorner, S., Schmid, W., and Barta, A. Activity of 3'-thio-AMP derivatives as ribosomal P-site substrates. Nucleic Acids Res. 2005 May; 33(9):3065-71.
Lorkovic ZJ, Lehner, R., Forstner, C., and Barta, A. Evolutionary conservation of minor U12-type spliceosome between plant and animals. RNA. 2005 Jul; 11(7):1095-107.
Gullerova M, Barta A, Lorkovic ZJ. AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II. RNA. 2006 Apr; 12(4):631-43.
de la Fuente van Bentem S, Anrather D, Roitinger E, Djamei A, Hufnagl T, Barta A, Csaszar E, Dohnal I, Lecourieux D, Hirt H. Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. Nucleic Acids Res. 2006 Jun 28; 34(11):3267-78.
Kalyna M, Lopato S, Voronin V, Barta A. Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins. Nucleic Acids Res. 2006; 34(16):4395-405.
Books
1) Baxter, J.D., Cooke, N.E., Miller, W.L., Barta, A., Richards, R., and Shine, J. (1980) "Structure and Expression of the genes for growth hormone and ACTH/ß-endorphin". In: Peptides 1980: Proc. of the 16th European Peptide Symposium. (K.Brunfeldt, ed.), Scriptor, Copenhagen, 73-89.
2) Ammerer, G., Hitzman, R.A., Hagie, F.E., Barta, A., and Hall, B.D. (1981). "The functional expression of mammalian genes in yeast". In: Recombinant DNA: Proc. 3rd Cleveland Symp. Macromolecules, (A.G. Walton, ed.) Elsevier, Amsterdam: 185-197.
3) Richards, R.I., Barta, A., Cathala, G., Whitefield, P., Cooke, N.E., Miller, W.L., Shine, J., and Baxter, J.D. (1982)." Structure and expression of the growth hormone set of genes and the pro-opiocortin gene". In Neuropeptides: Basic and Clinical Aspects, Proc. of the 11th Pfizer International Symposium, (G. Fink, and L.J. Whalley, eds.), Churchill, Livingston.
4) Baxter, J.D., Whitefield, P.L., Seeburg, P.H., Barta, A., Cooke, N.E., Eberhardt, N.L., Richards, R.I., Cathala, G., Wegenez, M., Martial J.A., and Shine, J. (1982) "Structure and Expression of Hormone Genes". In: Molecular Genetic Neuroscience (F.O. Schmitt, S.J. Bird and F.E. Bloom, eds.) Raven Press, New York, 231-238.
5) Kuechler, E., Steiner, G., and Barta, A. (1985) "Ribosomal components of the peptidyl transferase center". In: Mechanism of Protein Synthesis (E. Bermek, ed.) Springer Verlag, Berlin, Heidelberg, New York, Tokyo, 40-48.
6) Noller, H.F., Asire, M., Barta, A., Douthwaite, S., Goldstein, T., Gutell, R.R., Moazed, D., Normanly, J., Prince, J.B., Stern, S., Triman, K., Turner, S., Van Stolk, B., Wheaton, V., Weiser, B. (1986). " Studies on the structure and function of ribosomal RNA". In: Structure, Function, and Genetics of Ribosomes (Hardesty, B., and Kramer, G. eds.) Springer Verlag, New York, 143-163.
7) Eberhardt, N.L., Cattini, P., Hirt, H., Anderson, T., Peritz, L., Baxter, J.D., Mellon, P., Isaacs, R., Slater, E., and Barta, A. (1988). " Human Growth Hormone Genes: Structure, Evolution, Expression, and Hormonal Regulation." In Endocrine Genes (Y.-F. Lau, ed.) Oxford University Press, New York, Oxford, 149-168.
8) Kuechler, E., Steiner, G., and Barta, A. (1989) "Dissection of ribosomal peptidyl transferase center by photoaffinity labeling: P- and A-sites are located at different positions in domain V of 23S RNA". In: Photochemical Probes in Biochemistry (P. Nielsen and O. Buchardt, eds.) Nato Series, Kluwer Academic Publishers, 141-156.
9) Barta, A., Kuechler and Steiner, G. (1990) "Photoaffinity Labeling of the Peptidyltransferase Region" In: The Ribosome: Structure, Function and Evolution (W. Hill, A. Dahlberg, R.A. Garret, P.B. Moore, D. Schlessinger and J. R. Warner, eds.) American Society for Microbiology, Washington DC, 358-365.
10) Barta, A., & Halama, I. (1996) "The Elusive Peptidyltransferase - RNA or Protein?" In Ribosomal RNA and Group I Introns (Green, R., & Schroeder, R., Eds.). R.G. Lands Company, Chapman & Hall, New York, pp 35-54.