Publications since 2006

Zhang, Runxuan; Calixto, Cristiane P G; Marquez, Yamile; Venhuizen, Peter; Tzioutziou, Nikoleta A; Guo, Wenbin; Spensley, Mark; Entizne, Juan Carlos; Lewandowska, Dominika; Ten Have, Sara; Frei Dit Frey, Nicolas; Hirt, Heribert; James, Allan B; Nimmo, Hugh G; Barta, Andrea; Kalyna, Maria; Brown, John W S (2017). A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing. NUCLEIC ACIDS RES;9(45). PMID: 28402429
Barta, Andrea; Jantsch, Michael F (2017). RNA in Disease and development RNA BIOL;14(5):457-459. PMID: 28402218
Aronica, Lucia; Kasparek, Torben; Ruchman, David; Marquez, Yamile; Cipak, Lubos; Cipakova, Ingrid; Anrather, Dorothea; Mikolaskova, Barbora; Radtke, Maximilian; Sarkar, Sovan; Pai, Chen-Chun; Blaikley, Elizabeth; Walker, Carol; Shen, Kuo-Fang; Schroeder, Renee; Barta, Andrea; Forsburg, Susan L; Humphrey, Timothy C (2016). The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast. NUCLEIC ACIDS RES;44(4):1703-17.. PMID: 26682798
Brown, John W S; Simpson, Craig G; Marquez, Yamile; Gadd, Geoffrey M; Barta, Andrea; Kalyna, Maria (2015). Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts. PLANT CELL;27(8):2083-7. PMID: 26286536
Zhang, Runxuan; Calixto, Cristiane P G; Tzioutziou, Nikoleta A; James, Allan B; Simpson, Craig G; Guo, Wenbin; Marquez, Yamile; Kalyna, Maria; Patro, Rob; Eyras, Eduardo; Barta, Andrea; Nimmo, Hugh G; Brown, John W S (2015). AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist;208(1):96-101. PMID: 26111100
Marquez, Yamile; Höpfler, Markus; Ayatollahi, Zahra; Barta, Andrea; Kalyna, Maria (2015). Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity. GENOME RES;25(7):995-1007. PMID: 25934563
Petrillo, Ezequiel; Herz, Micaela A Godoy; Fuchs, Armin; Reifer, Dominik; Fuller, John; Yanovsky, Marcelo J; Simpson, Craig; Brown, John W S; Barta, Andrea; Kalyna, Maria; Kornblihtt, Alberto R (2014). A chloroplast retrograde signal regulates nuclear alternative splicing. SCIENCE;344(6182):427-30. PMID: 24763593
Göhring, Janett; Fulcher, Nick; Schilcher, Kurt; Barta, Andrea; Jacak, Jaroslaw (2014). Suitable transfection methods for single particle tracing in plant suspension cells. Plant methods;10:15. PMID: 24991230
Göhring, Janett; Fulcher, Nick; Jacak, Jaroslaw; Riha, Karel (2014). TeloTool: a new tool for telomere length measurement from terminal restriction fragment analysis with improved probe intensity correction. NUCLEIC ACIDS RES;42(3):e21. PMID: 24366880
Sams, Michael; Silye, Rene; Göhring, Janett; Muresan, Leila; Schilcher, Kurt; Jacak, Jaroslaw (2014). Spatial cluster analysis of nanoscopically mapped serotonin receptors for classification of fixed brain tissue. Journal of biomedical optics.;19(1):011021. PMID: 24297043
Singh, Amarjeet; Kanwar, Poonam; Yadav, Akhilesh K; Mishra, Manali; Jha, Saroj K; Baranwal, Vinay; Pandey, Amita; Kapoor, Sanjay; Tyagi, Akhilesh K; Pandey, Girdhar K (2014). Genome-wide expressional and functional analysis of calcium transport elements during abiotic stress and development in rice. FEBS J;281(3):894-915. PMID: 24286292
Göhring, Janett; Jacak, Jaroslaw; Barta, Andrea (2014). Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis. PLANT CELL;26(2):754-64. PMID: 24532591
Petrillo, Ezequiel; Godoy Herz, Micaela A; Barta, Andrea; Kalyna, Maria; Kornblihtt, Alberto R (2014). Let there be light: Regulation of gene expression in plants. RNA BIOL;11(10):1215-20. PMID: 25590224
Godoy Herz, Micaela A; Kornblihtt, Alberto R; Barta, Andrea; Kalyna, Maria; Petrillo, Ezequiel (2014). Shedding light on the chloroplast as a remote control of nuclear gene expression. Plant Signal Behav;9(11):e976150. PMID: 25482785
Bannikova, Olga; Zywicki, Marek; Marquez, Yamile; Skrahina, Tatsiana; Kalyna, Maria; Barta, Andrea (2013). Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity. NUCLEIC ACIDS RES;41(3):1783-96. PMID: 23248006
Bielewicz, Dawid; Kalak, Malgorzata; Kalyna, Maria; Windels, David; Barta, Andrea; Vazquez, Franck; Szweykowska-Kulinska, Zofia; Jarmolowski, Artur (2013). Introns of plant pri-miRNAs enhance miRNA biogenesis. EMBO REP;14(7):622-8. PMID: 23681439
Reddy, Anireddy S N; Marquez, Yamile; Kalyna, Maria; Barta, Andrea (2013). Complexity of the alternative splicing landscape in plants. PLANT CELL;25(10):3657-83. PMID: 24179125
A.S.N. Reddy,Irene S. Day, Janett Göhring and Andrea Barta (2012). Localization and dynamics of plant splicing regulators PLANT PHYSIOL;1(158):67-77. PMID: 22045923
Kalyna, Maria; Simpson, Craig G; Syed, Naeem H; Lewandowska, Dominika; Marquez, Yamile; Kusenda, Branislav; Marshall, Jacqueline; Fuller, John; Cardle, Linda; McNicol, Jim; Dihn, Huy Q; Barta, Andrea; Brown, John W S (2012). Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. NUCLEIC ACIDS RES;40(6):2454-69. PMID: 22127866
Yamile Marquez, John W.S. Brown, Craig Simpson, Andrea Barta, Maria Kalyna (2012). Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. GENOME RES. PMID: 22391557