Publications since 2006

Kurzbach, Dennis; Beier, Andreas; Vanas, Agathe; Flamm, Andrea G; Platzer, Gerald; Schwarz, Thomas C; Konrat, Robert (2017). NMR probing and visualization of correlated structural fluctuations in intrinsically disordered proteins. PHYS CHEM CHEM PHYS;19(16):10651-10656. PMID: 28397898
Weichselbaum, David; Zagrovic, Bojan; Polyansky, Anton A (2017). Fuento: functional enrichment for bioinformatics. BIOINFORMATICS. PMID: 28379299
Fleck, Markus; Polyansky, Anton A; Zagrovic, Bojan (2016). PARENT: A Parallel Software Suite for the Calculation of Configurational Entropy in Biomolecular Systems. J CHEM THEORY COMPUT;12(4):2055-65. PMID: 26989950
Hajnic, Matea; Ruiter, Anita de; Polyansky, Anton A; Zagrovic, Bojan (2016). Inosine Nucleobase Acts as Guanine in Interactions with Protein Side Chains. J AM CHEM SOC;138(17):5519-22.. PMID: 27093234
Petrov, Drazen; Daura, Xavier; Zagrovic, Bojan (2016). Effect of Oxidative Damage on the Stability and Dimerization of Superoxide Dismutase 1. BIOPHYS J;110(7):1499-509. PMID: 27074676
Lenz, Dominic A; Mladek, Bianca M; Likos, Christos N; Blaak, Ronald (2016). Thermodynamic stability and structural properties of cluster crystals formed by amphiphilic dendrimers. J CHEM PHYS;144(20):204901. PMID: 27250325
Martinez, Javier; Zagrovic, Bojan (2016). A code within a code: how codons influence mRNA stability. EMBO J;35(17):1845 - 1955. PMID: 27562506
Gallego, Laura D; Ghodgaonkar Steger, Medini; Polyansky, Anton A; Schubert, Tobias; Zagrovic, Bojan; Zheng, Ning; Clausen, Tim; Herzog, Franz; Köhler, Alwin (2016). Structural mechanism for the recognition and ubiquitination of a single nucleosome residue by Rad6-Bre1. P NATL ACAD SCI USA;113(38):10553–10558. PMID: 27601672
Fracchiolla, D., Sawa-Makarska, J., Zens, B., de Ruiter, A., Zaffagnini,G., Brezovich, A., Romanov, J., Runggatscher, K., Kraft,C., Zagrovic, B. and Sascha Martens (2016). Mechanism of cargo-directed Atg8 conjugation during selective autophagy eLife. PMID: 27879200
Hlevnjak, Mario; Zagrovic, Bojan (2015). Malleable nature of mRNA-protein compositional complementarity and its functional significance. NUCLEIC ACIDS RES;43(6):3012-21. PMID: 25753660
de Ruiter, Anita; Zagrovic, Bojan (2015). Absolute binding-free energies between standard RNA/DNA nucleobases and amino-acid sidechain analogs in different environments. NUCLEIC ACIDS RES;43(2):708-18. PMID: 25550435
Zhang, Liqun; Polyansky, Anton; Buck, Matthias (2015). Modeling Transmembrane Domain Dimers/Trimers of Plexin Receptors: Implications for Mechanisms of Signal Transmission across the Membrane. PLOS ONE;10(4):e0121513. PMID: 25837709
Platzer, Gerald; Zerko, Szymon; Saxena, Saurabh; Kozminski, Wiktor; Konrat, Robert (2015). (1)H, (15)N, (13)C resonance assignment of human osteopontin. Biomolecular NMR Assignments;9(2):289-92. PMID: 25616494
Hajnic, Matea; Osorio, Juan I; Zagrovic, Bojan (2015). Interaction preferences between nucleobase mimetics and amino acids in aqueous solutions. PHYS CHEM CHEM PHYS;17(33):21414-22. PMID: 26219945
Märtens, Birgit; Bezerra, Gustavo Arruda; Kreuter, Mathias Josef; Grishkovskaya, Irina; Manica, Andrea; Arkhipova, Valentina; Djinovic-Carugo, Kristina; Bläsi, Udo (2015). The Heptameric SmAP1 and SmAP2 Proteins of the Crenarchaeon Sulfolobus Solfataricus Bind to Common and Distinct RNA Targets. Life.;5(2):1264-81. PMID: 25905548
Velghe, A I; Van Cauwenberghe, S; Polyansky, A A; Chand, D; Montano-Almendras, C P; Charni, S; Hallberg, B; Essaghir, A; Demoulin, J-B (2014). PDGFRA alterations in cancer: characterization of a gain-of-function V536E transmembrane mutant as well as loss-of-function and passenger mutations. ONCOGENE;33(20):2568-76. PMID: 23752188
Peter, Bradley; Polyansky, Anton A; Fanucchi, Sylvia; Dirr, Heini W (2014). A Lys-Trp Cation-π Interaction Mediates the Dimerization and Function of the Chloride Intracellular Channel Protein 1 Transmembrane Domain. BIOCHEMISTRY-US;53(1):57-67. PMID: 24328417
Polyansky, Anton A; Chugunov, Anton O; Volynsky, Pavel E; Krylov, Nikolay A; Nolde, Dmitry E; Efremov, Roman G (2014). PREDDIMER: a web server for prediction of transmembrane helical dimers. BIOINFORMATICS. PMID: 24202542
Kuzmanic, Antonija; Zagrovic, Bojan (2014). Dependence of protein crystal stability on residue charge states and ion content of crystal solvent. BIOPHYS J;106(3):677-86. PMID: 24507608
Kuzmanic, Antonija; Pannu, Navraj S; Zagrovic, Bojan (2014). X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals. NAT COMMUN;5:1-10. PMID: 24504120