Publications since 2006

Weichselbaum, David; Zagrovic, Bojan; Polyansky, Anton A (2017). Fuento: functional enrichment for bioinformatics. BIOINFORMATICS;33(16):2604-2606. PMID: 28379299
Tanja Kaufmann, Irina Grishkovskaya, Anton A. Polyansky, Sebastian Kostrhon, Eva Kukolj, Karin M. Olek, Sebastien Herbert, Etienne Beltzung, Karl Mechtler, Thomas Peterbauer, Josef Gotzmann, Lijuan Zhang, Markus Hartl, Bojan Zagrovic, Kareem Elsayad, Kristina Djinovic-Carugo, Dea Slade (2017). A novel non-canonical PIP-box mediates PARG interaction with PCNA NUCLEIC ACIDS RES. PMID: 28934471
de Ruiter, Anita; Polyansky, Anton A; Zagrovic, Bojan (2017). Dependence of Binding Free Energies between RNA Nucleobases and Protein Side Chains on Local Dielectric Properties. J CHEM THEORY COMPUT. PMID: 28768101
Bartonek, Lukas; Zagrovic, Bojan (2017). mRNA/protein sequence complementarity and its determinants: The impact of affinity scales. PLOS COMPUT BIOL;13(7):e1005648. PMID: 28750009
Fleck, Markus; Polyansky, Anton A; Zagrovic, Bojan (2016). PARENT: A Parallel Software Suite for the Calculation of Configurational Entropy in Biomolecular Systems. J CHEM THEORY COMPUT;12(4):2055-65. PMID: 26989950
Hajnic, Matea; Ruiter, Anita de; Polyansky, Anton A; Zagrovic, Bojan (2016). Inosine Nucleobase Acts as Guanine in Interactions with Protein Side Chains. J AM CHEM SOC;138(17):5519-22.. PMID: 27093234
Petrov, Drazen; Daura, Xavier; Zagrovic, Bojan (2016). Effect of Oxidative Damage on the Stability and Dimerization of Superoxide Dismutase 1. BIOPHYS J;110(7):1499-509. PMID: 27074676
Lenz, Dominic A; Mladek, Bianca M; Likos, Christos N; Blaak, Ronald (2016). Thermodynamic stability and structural properties of cluster crystals formed by amphiphilic dendrimers. J CHEM PHYS;144(20):204901. PMID: 27250325
Martinez, Javier; Zagrovic, Bojan (2016). A code within a code: how codons influence mRNA stability. EMBO J;35(17):1845 - 1955. PMID: 27562506
Gallego, Laura D; Ghodgaonkar Steger, Medini; Polyansky, Anton A; Schubert, Tobias; Zagrovic, Bojan; Zheng, Ning; Clausen, Tim; Herzog, Franz; Köhler, Alwin (2016). Structural mechanism for the recognition and ubiquitination of a single nucleosome residue by Rad6-Bre1. P NATL ACAD SCI USA;113(38):10553–10558. PMID: 27601672
Fracchiolla, D., Sawa-Makarska, J., Zens, B., de Ruiter, A., Zaffagnini,G., Brezovich, A., Romanov, J., Runggatscher, K., Kraft,C., Zagrovic, B. and Sascha Martens (2016). Mechanism of cargo-directed Atg8 conjugation during selective autophagy eLife. PMID: 27879200
Hlevnjak, Mario; Zagrovic, Bojan (2015). Malleable nature of mRNA-protein compositional complementarity and its functional significance. NUCLEIC ACIDS RES;43(6):3012-21. PMID: 25753660
de Ruiter, Anita; Zagrovic, Bojan (2015). Absolute binding-free energies between standard RNA/DNA nucleobases and amino-acid sidechain analogs in different environments. NUCLEIC ACIDS RES;43(2):708-18. PMID: 25550435
Zhang, Liqun; Polyansky, Anton; Buck, Matthias (2015). Modeling Transmembrane Domain Dimers/Trimers of Plexin Receptors: Implications for Mechanisms of Signal Transmission across the Membrane. PLOS ONE;10(4):e0121513. PMID: 25837709
Platzer, Gerald; Zerko, Szymon; Saxena, Saurabh; Kozminski, Wiktor; Konrat, Robert (2015). (1)H, (15)N, (13)C resonance assignment of human osteopontin. Biomolecular NMR Assignments;9(2):289-92. PMID: 25616494
Hajnic, Matea; Osorio, Juan I; Zagrovic, Bojan (2015). Interaction preferences between nucleobase mimetics and amino acids in aqueous solutions. PHYS CHEM CHEM PHYS;17(33):21414-22. PMID: 26219945
Märtens, Birgit; Bezerra, Gustavo Arruda; Kreuter, Mathias Josef; Grishkovskaya, Irina; Manica, Andrea; Arkhipova, Valentina; Djinovic-Carugo, Kristina; Bläsi, Udo (2015). The Heptameric SmAP1 and SmAP2 Proteins of the Crenarchaeon Sulfolobus Solfataricus Bind to Common and Distinct RNA Targets. Life.;5(2):1264-81. PMID: 25905548
Velghe, A I; Van Cauwenberghe, S; Polyansky, A A; Chand, D; Montano-Almendras, C P; Charni, S; Hallberg, B; Essaghir, A; Demoulin, J-B (2014). PDGFRA alterations in cancer: characterization of a gain-of-function V536E transmembrane mutant as well as loss-of-function and passenger mutations. ONCOGENE;33(20):2568-76. PMID: 23752188
Peter, Bradley; Polyansky, Anton A; Fanucchi, Sylvia; Dirr, Heini W (2014). A Lys-Trp Cation-π Interaction Mediates the Dimerization and Function of the Chloride Intracellular Channel Protein 1 Transmembrane Domain. BIOCHEMISTRY-US;53(1):57-67. PMID: 24328417
Polyansky, Anton A; Chugunov, Anton O; Volynsky, Pavel E; Krylov, Nikolay A; Nolde, Dmitry E; Efremov, Roman G (2014). PREDDIMER: a web server for prediction of transmembrane helical dimers. BIOINFORMATICS. PMID: 24202542