Publications since 2006

Alves, Ricardo J Eloy; Minh, Bui Quang; Urich, Tim; von Haeseler, Arndt; Schleper, Christa (2018). Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes. NAT COMMUN;9(1):1517. PMID: 29666365
Hoang, Diep Thi; Vinh, Le Sy; Flouri, Tomá?; Stamatakis, Alexandros; von Haeseler, Arndt; Minh, Bui Quang (2018). MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation. BMC EVOL BIOL;18(1):11. PMID: 29390973
Uhse, Simon; Pflug, Florian G; Stirnberg, Alexandra; Ehrlinger, Klaus; von Haeseler, Arndt; Djamei, Armin (2018). In vivo insertion pool sequencing identifies virulence factors in a complex fungal-host interaction. PLOS BIOLOGY;16(4):e2005129. PMID: 29684023
Muhar, Matthias; Ebert, Anja; Neumann, Tobias; Umkehrer, Christian; Jude, Julian; Wieshofer, Corinna; Rescheneder, Philipp; Lipp, Jesse J; Herzog, Veronika A; Reichholf, Brian; Cisneros, David A; Hoffmann, Thomas; Schlapansky, Moritz F; Bhat, Pooja; von Haeseler, Arndt; Köcher, Thomas; Obenauf, Anna C; Popow, Johannes; Ameres, Stefan L; Zuber, Johannes (2018). SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis. SCIENCE. PMID: 29622725
Pflug, Florian G; von Haeseler, Arndt (2018). TRUmiCount: Correctly counting absolute numbers of molecules using unique molecular identifiers. BIOINFORMATICS. PMID: 29672674
Müller, Christoph; Krunic, Milica; Wendt, Judith; von Haeseler, Arndt; Okamoto, Ichiro (2018). Germline Variants in the POT1-Gene in High-Risk Melanoma Patients in Austria. G3-Genes Genomes Genetics. PMID: 29523635
Link, Jana; Paouneskou, Dimitra; Velkova, Maria; Daryabeigi, Anahita; Laos, Triin; Labella, Sara; Barroso, Consuelo; Pacheco Piñol, Sarai; Montoya, Alex; Kramer, Holger; Woglar, Alexander; Baudrimont, Antoine; Markert, Sebastian Mathias; Stigloher, Christian; Martinez-Perez, Enrique; Dammermann, Alexander; Alsheimer, Manfred; Zetka, Monique; Jantsch, Verena (2018). Transient and Partial Nuclear Lamina Disruption Promotes Chromosome Movement in Early Meiotic Prophase. Dev Cell;45(2):212-225.e7. PMID: 29689196
Baumgartner, Christian; Toifl, Stefanie; Farlik, Matthias; Halbritter, Florian; Scheicher, Ruth; Fischer, Irmgard; Sexl, Veronika; Bock, Christoph; Baccarini, Manuela (2018). An ERK-Dependent Feedback Mechanism Prevents Hematopoietic Stem Cell Exhaustion. Cell stem cell.;22(6):879-892.e6. PMID: 29804890
Sedlyarov, Vitaly; Eichner, Ruth; Girardi, Enrico; Essletzbichler, Patrick; Goldmann, Ulrich; Nunes-Hasler, Paula; Srndic, Ismet; Moskovskich, Anna; Heinz, Leonhard X; Kartnig, Felix; Bigenzahn, Johannes W; Rebsamen, Manuele; Kovarik, Pavel; Demaurex, Nicolas; Superti-Furga, Giulio (2018). The Bicarbonate Transporter SLC4A7 Plays a Key Role in Macrophage Phagosome Acidification. Cell Host Microbe;23(6):766-774.e5. PMID: 29779931
Hong, Ye; Velkova, Maria; Silva, Nicola; Jagut, Marlène; Scheidt, Viktor; Labib, Karim; Jantsch, Verena; Gartner, Anton (2018). The conserved LEM-3/Ankle1 nuclease is involved in the combinatorial regulation of meiotic recombination repair and chromosome segregation in Caenorhabditis elegans. PLOS GENET;14(6):e1007453. PMID: 29879106
Porpaczy, Edit; Tripolt, Sabrina; Hoelbl-Kovacic, Andrea; Gisslinger, Bettina; Bago-Horvath, Zsuzsanna; Casanova-Hevia, Emilio; Clappier, Emmanuelle; Decker, Thomas; Fajmann, Sabine; Fux, Daniela A; Greiner, Georg; Gueltekin, Sinan; Heller, Gerwin; Herkner, Harald; Hoermann, Gregor; Kiladjian, Jean-Jacques; Kolbe, Thomas; Kornauth, Christoph; Krauth, Maria-Theresa; Kralovics, Robert; Muellauer, Leonhard; Mueller, Mathias; Prchal-Murphy, Michaela; Putz, Eva Maria; Raffoux, Emmanuel; Schiefer, Ana-Iris; Schmetterer, Klaus; Schneckenleithner, Christine; Simonitsch-Klupp, Ingrid; Skrabs, Cathrin; Sperr, Wolfgang R; Staber, Philipp Bernhard; Strobl, Birgit; Valent, Peter; Jaeger, Ulrich; Gisslinger, Heinz; Sexl, Veronika (2018). Aggressive B-cell lymphomas in patients with myelofibrosis receiving JAK1/2 inhibitor therapy. BLOOD. PMID: 29907599
Romanauska, Anete; Köhler, Alwin (2018). The Inner Nuclear Membrane Is a Metabolically Active Territory that Generates Nuclear Lipid Droplets. CELL. PMID: 29937227
Zaffagnini, Gabriele; Savova, Adriana; Danieli, Alberto; Romanov, Julia; Tremel, Shirley; Ebner, Michael; Peterbauer, Thomas; Sztacho, Martin; Trapannone, Riccardo; Tarafder, Abul K; Sachse, Carsten; Martens, Sascha (2018). Phasing out the bad-How SQSTM1/p62 sequesters ubiquitinated proteins for degradation by autophagy. AUTOPHAGY. PMID: 29929426
Leonard, Thomas A (2018). Reply to Agarwal: Activity against nuclear substrates is not necessarily mediated by nuclear Akt. P NATL ACAD SCI USA. PMID: 29907610
Ali, Emine I; Loidl, Josef; Howard-Till, Rachel A (2018). A streamlined cohesin apparatus is sufficient for mitosis and meiosis in the protist Tetrahymena. CHROMOSOMA. PMID: 29948142
Kovarik, Pavel; Ebner, Florian; Sedlyarov, Vitaly (2017). Posttranscriptional regulation of cytokine expression. Cytokine.;89:21-26. PMID: 26586165
Agustinho, Daniel Paiva; de Oliveira, Marco Antônio; Tavares, Aldo Henrique; Derengowski, Lorena; Stolz, Valentina; Guilhelmelli, Fernanda; Mortari, Márcia Renata; Kuchler, Karl; Silva-Pereira, Ildinete (2017). Dectin-1 is required for miR155 upregulation in murine macrophages in response to Candida albicans. Virulence.;8(1):41-52. PMID: 27294852
Nogueira, Filomena; Istel, Fabian; Pereira, Leonel; Tscherner, Michael; Kuchler, Karl (2017). Immunological Identification of Fungal Species. Meth Mol Biol;1508:339-359. PMID: 27837515
Prakash, C. and A. von Haeseler (2017). An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Non-uniformity of the Expected Fragment Starting Point and Coverage Profile. J COMPUT BIOL;24(3):200-212. PMID: 27661099
Temmel, Hannes; Müller, Christian; Sauert, Martina; Vesper, Oliver; Reiss, Ariela; Popow, Johannes; Martinez, Javier; Moll, Isabella (2017). The RNA ligase RtcB reverses MazF-induced ribosome heterogeneity in Escherichia coli. NUCLEIC ACIDS RES;8(45):4708-4721. PMID: 27789694